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References to publications, sorted by year and author.

Angskun, T, Fagg, GE, Bosilca, G, Pjesivac-Grbovic, J, and Dongarra, JJ (2006 submitted).
Scalable Fault Tolerant Protocol for Parallel Runtime Environments
In: 2006 Euro PVM/MPI.

London, K, Moore, S, Terpstra, D, and Dongarra, J (2006 submitted).
Statistical Estimation of Processor Thermal Properties from a Standard Hardware Counter Interface
In: Proceedings of the High-Performance, Power-Aware Computing (HPPAC 2006) to be held in conjunction with the International Parallel and Distributed Processing Symposium - IPDPS'2006, IEEE Press.

Pjesivac-Grbovic, J, Fagg, GE, Angskun, T, Bosilca, G, and Dongarra, JJ (2006 submitted).
MPI Collective Algorithm Selection and Quadtree Encoding
In: 2006 Euro PVM/MPI.

Aguilera, G, Teller, PJ, Taufer, M, and Wolf, F (2006).
A Systematic Multi-step Methodology for Performance Analysis of Communication Traces of Distributed Applications based on Hierarchical Clustering
In: Proceedings of the 5th International Workshop on Performance Modeling, Evaluation, and Organization of Parallel and Distributed Systems (PMEO-PDS 2006), IEEE Computer Society.

Angskun, T, Fagg, GE, Bosilca, G, Pjesivac-Grbovic, J, and Dongarra, JJ (2006).
Self-Healing Network for Scalable Fault Tolerant Runtime Environments
In: DAPSYS 2006 Conference Proceedings, Innsbruck, Austria, DAPSYS 6th Austrian-Hungarian Workshop on Distributed and Parallel SystemsS 2006 Conference, 6th Austrian-Hungarian Workshop on Distributed and Parallel Systems.

Budimlic, Z, Joyner, M, and Kennedy, K (2006).
Improving Compilation of Java Scientific Applications
The International Journal of High Performance Computing Applications.

Fagg, GE, Pjesivac-Grbovic, J, Bosilca, G, Angskun, T, Dongarra, JJ, and Jeannot, E (2006).
Flexible collective communication tuning architecture applied to Open MPI
In: 2006 Euro PVM/MPI (submitted).

Pjesivac-Grbovic, J, Angskun, T, Bosilca, G, Fagg, GE, Gabriel, E, and Dongarra, JJ (2006).
Performance Analysis of MPI Collective Operations
Cluster Computing.

Qasem, A and Kennedy, K (2006).
Profitable Loop Fusion and Tiling Using Model-driven Empirical Search
In: Proceedings of the 20th ACM International Conference on SuperComputing (ICS06), ACM Press.

Qasem, A, Kennedy, K, and Mellor-Crummey, J (2006).
Automatic Tuning of Whole Applications Using Direct Search and a Performance-based Transformation System
The Journal of Supercomputing, Special Issue on Computer Science Research Supporting High-Performance Applications, Volume 36(2):pp. 183 - 196.

YarKhan, A, Seymour, K, Sagi, K, Shi, Z, and Dongarra, J (2006).
Recent Developments in GridSolve
International Journal of High Performance Computing Special Issue on the Aussois Workshop, Volume 20(1):pp. 131-141.

Zhao, Y and Kennedy, K (2006).
Dependence-based Code Generation for a CELL Processor
In: Proceedings of the 19th International Workshop on Languages and Compilers for Parallel Computing (LCPC 2006), Springer-Verlag, Lecture Notes in Computer Science.

Zhao, Y and Kennedy, K (2006).
Compiling for Increasing On-chip Parallelism
In: Workshop on Tools and Compilers for Hardware Acceleration (TCHA) in conjunction with the Fifteenth International Conference on Parallel Architectures and Compilation Techniques (PACT 2006), ACM Press.

Symes, W, Padula, A, and Scott, S (2005 submitted).
The Standard Vector Library: A Software Framework For Coupling Complex Simulation And Optimization
ACM Transactions on Mathematical Software.

Wolf, F, Mohr, B, Dongarra, J, and Moore, S (2005 accepted).
Automatic Search for Patterns of Inefficient Behavior in Parallel Applications
Concurrency Practice and Experience.

Andersson, U and Mucci, P (2005).
Analysis and Optimization of Yee Bench using Hardware Performance Counters
In: Proceedings of Parallel Computing 2005 (ParCo), Malaga, Spain, ParCo.

Bhatia, N, Moore, S, Wolf, F, Dongarra, J, and Mohr, B (2005).
A Pattern-Based Approach to Automated Application Performance Analysis
In: Workshop on Patterns in High Performance Computing (patHPC).

Bhatia, N, Song, F, Wolf, F, Dongarra, J, Mohr, B, and Moore, S (2005).
Automatic Experimental Analysis of Communication Patterns in Virtual Topologies
In: Proceedings of the International Conference on Parallel Processing (ICPP05), pp. 465 - 472, IEEE.

Bosilca, G, Chen, Z, Dongarra, J, Eijkhout, V, Fagg, GE, Fuentes, E, Langou, J, Luszczek, P, Pjesivac-Grbovic, J, Seymour, K, You, H, and Vadhiyar, SS (2005).
Self Adapting Numerical Software SANS Effort
IBM Journal of Research and Development.

Budimlic, Z and Kennedy, K (2005).
Compiling Almost-Whole Java Programs
Concurrency and Computation: Practice and Experience, Volume 17(5):pp. 573-588.

Carle, A and Fagan, M (2005).
Reducing Reverse Mode Memory Requirements by Using Profile-Driven Checkpointing
Future Generation Computer Systems, Volume 21(8):pp. 1380-1390.

Chavarria-Miranda, D and Mellor-Crummey, J (2005).
Effective communication coalescing for data-parallel applications
In: Principles and Practice of Parallel Programming, pp. 14 - 25, New York, NY, USA, ACM Press.

Chavarria-Miranda, D, Jin, G, and Mellor-Crummey, J (2005).
COTS Clusters vs. the Earth Simulator: An Application Study Using IMPACT-3D
In: Proceedings of the 2005 International Parallel and Distributed Processing Symposium, pp. 88b, Denver, Colorado, IEEE.

Chen, Z and Dongarra, J (2005).
Condition Numbers of Gaussian Random Matrices
SIAM Journal on Matrix Analysis and Applications, Volume 27(3):pp. 603-620.

Chen, Z and Dongarra, J (2005).
Numerically Stable Real Number Codes Based on Random Matrices
In: Proceedings of the Computational Science - ICCS 2005, 5th International Conference, ed. by Vaidy S. Sunderam and G. Dick van Albada and Peter M. A. Sloot and Jack Dongarra, pp. 115–122, Springer.

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