Markidis, S, Lapenta, G, VanderHeyden, B, and Budimlic, Z (2005).
Implementation and Performance of a Particle in Cell Code Written in Java
Concurrency and Computation: Practice and Experience, Volume 17(7-8):pp. 821 - 837.

Moore, S, Cronk, D, Wolf, F, Purkayastha, A, Teller, P, Araiza, R, Aguilera, M, and Nava, J (2005).
Performance Profiling and Analysis of DoD Applications using PAPI and TAU
Proceedings of the DoD High Performance Computing Modernization Programs User Group Conference.

Moore, S, Wolf, F, Dongarra, J, Shende, S, Teller, P, and Mohr, B (2005).
A Scalable Approach to MPI Application Performance Analysis
In: Proceedings of Recent Advances in Parallel Virtual Machine and Message Passing Interface: 12th European PVM/MPI Users’ Group Meeting, chap. Volume 3666, pp. p. 309, Springer-Verlag GmbH Lecture Notes in Computer Science.

Moore, S, Wolf, F, Mohr, B, and Dongarra, J (2005).
Improving Time to Solution with Automated Performance Analysis
In: Proceedings of the 2nd Workshop on Productivity and Performance in High-End Computing (P-PHEC), pp. 20 - 26, Productivity and Performance in High-End Computing (P-PHEC).

Mucci, P, Ahlin, D, Danielsson, J, Ekman, P, and Malinowski, L (2005).
PerfMiner: Cluster-Wide Collection, Storage and Presentation of Application Level Hardware Performance Data
In: Proceedings of 2005 European Conference on Parallel Computers (Euro-Par), pp. 124–133, Monte de Caparica, Portugal.

Pjesivac-Grbovic, J, Angskun, T, Bosilca, G, Fagg, GE, Gabriel, E, and Dongarra, JJ (2005).
Performance Analysis of MPI Collective Operations
In: 19th International Parallel and Distributed Processing, IEEE Computer Society Press.

Qasem, A and Kennedy, K (2005).
A Cache-conscious Profitability Model for Empirical Tuning of Loop Fusion
In: Proceedings of the 18th International Workshop on Languages and Compilers for Parallel Computing (LCPC 2005), Springer-Verlag, Lecture Notes in Computer Science.

Reed, DA and Mendes, CL (2005).
Intelligent Monitoring for Adaptation in Grid Applications
Proceedings of the IEEE, Volume 93(2):426-435.

Seymour, K, YarKhan, A, Agrawal, S, and Dongarra, J (2005).
NetSolve: Grid Enabling Scientific Computing Environments
In: Grid Computing and New Frontiers of High Performance Processing, ed. by L. Grandinetti, Elsevier.

Sharma, S, Bridges, PG, and Maccabe, AB (2005).
A Framework for Analyzing Linux System Overheads on HPC Applications
In: Proceedings of the 2005 Los Alamos Computer Science Institute Symposium (LACSI 2005), Los Alamos Computer Science Institute.

Vadhiyar, SS and Dongarra, JJ (2005).
Self adaptivity in Grid computing
Concurrency and Computation: Practice and, 17(2–4):235–257.

Wolf, F, Malony, A, Shende, S, and Morris, A (2005).
Trace-Based Parallel Performance Overhead
In: High Performance Computing and Communcations: First International Conference, HPCC 2005, Sorrento, Italy, September 21-23, 2005. Proceedings, ed. by Laurence T. Yang, Omer F. Rana, Beniamino Di Martino, Jack Dongarra, chap. Lecture Notes in Computer Science, pp. 617, Springer-Verlag GmbH.

Zhao, Y and Kennedy, K (2005).
Scalarization Using Loop Alignment and Loop Skewing
Journal of Supercomputing, Volume 31(1):pp. 5–46.

Zhao, Y and Kennedy, K (2005).
Scalarization on Short Vector Machines
In: Proceedings of the 2005 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS), IEEE Press.

Zhao, Y, Yi, Q, Kennedy, K, Quinlan, D, and Vuduc, R (2005).
Parameterizing Loop Fusion for Automated Empirical Tuning
Center for Applied Scientific Computing, Lawrence Livermore National Laboratory, Technical Report(UCRL-TR-217808), Livermore, California, USA.

Zhu, W, Bridges, PG, Maccabe, AB, and Maccabe, AB (2005).
Online Critical Path Profiling for Parallel Applications
In: Proceedings of the 2005 IEEE International Conference on Cluster Computing (Cluster 2005), Boston, MA, IEEE.

Huang, L, Chapman, B, and Kendall, R (2004 to appear).
Executing OpenMP on Distributed Memory Systems via Global Arrays
Journal of Parallel Computing.

Abramson, MA, Audet, C, and Dennis, JJ (2004).
Filter Pattern Search Algorihtms for Mixed Variable Constrained Optimization Problems
Rice University, Department of Computational and Applied Mathematics, 6100 Main Street, Houston, TX 77005.

Abramson, MA, Audet, C, and John E. Dennis, J (2004).
Generalized Pattern Searches with Derivative Information
Mathematical Programming Series B, Volume 100(1):pp. 3 - 25.

Almagor, L, Cooper, KD, Grosul, A, Harvey, TJ, Reeves, SW, Subramanian, D, Torczon, L, and Waterman, T (2004).
Finding Effective Compilation Sequences
Proceedings of the 2004 ACM SIGPLAN Conference on Languages, Compilers, and Tools for Embedded Systems, Washington, DC, USA.

Audet, C and Dennis, JJ (2004).
A Pattern Search Filter Method for Nonlinear Programming without Derivatives
SIAM Journal on Optimization, Volume 14(4):pp. 980-1010.

Audet, C and Dennis, JJ (2004).
Mesh Adaptive Direct Search Algorithms for Constrained Optimization
Les Journées de l'optimisation 2004.

Berrier, KL, Sorensen, DC, and Khoury, DS (2004).
Solving the Inverse Problem of Electrocardiography Using a Duncan and Horn Formulation of the Kalman Filter
IEEE Transactions on Biomedical Engineering, Volume 51(Issue 3):507-515.

Bridges, PG and Maccabe, AB (2004).
IMPuLSE: Integrated Monitoring And Profiling For Large-Scale Environments
In: Seventh Workshop on Languages, Compilers, and Run-time Support for Scalable Systems, Houston, TX, University of Houston.

Carle, A and Fagan, M (2004).
Activity Analysis: Algorithms and Effectiveness
In: Proceedings of the International Conference on Automatic Differentiation, Gleatcher Center, Chicago, IL, USA, Argonne National Laboratory.